Humans are both very like and very different from other species we find on Earth. At the sub-cellular and biochemical level, the similarities, the almost universality of the DNA code and its property of self-duplication and storage of genetic information is breathtaking. On the other hand, no other species has succeeded in the scope and breadth of it’s colonization of this planet. Much of the “success” in growing a population that now exceeds seven billion individuals can be attributed to our being a social species. Sociability and its evolutionary roots have been well studied. However there does seem to be something missing. The rapid runaway expansion of human culture and the extraordinary flowering of human art, which might be attributed in turn to the literal expansion of the human brain seem to require further explanation. Continue reading
Category Archives: Evolution
Adam and Eve and Jerry and Bryan and Vincent
Bryan College in Dayton, Tennessee has recently added to its statement of faith, to which faculty members must subscribe, a “clarification” that
We believe that all humanity is descended from Adam and Eve. They are historical persons created by God in a special formative act, and not from previously existing life forms.
Jerry Coyne at his Why Evolution Is True blog has pointed at this with alarm here, and he linked back to the Chattanooga Times Free Press story here. Jerry cites studies showing from the amount of variability in human populations, that effective population size of the individuals leaving Africa in the Out-Of-Africa event cannot have been much less than 2250, and the effective population size in Africa cannot have been much less than 10,000.
VJTorley at Uncommon Descent has published a firm response, saying Jerry was “In a pickle about Adam and Eve” and saying that when he said that “2250 is greater than two”
Evidently math is not Professor Coyne’s forte.
Note: 2,500 isn’t the same as 2,250.
Note: 2,250 + 10,000 = 12,250.
The math lesson is over.
He also quotes a paper by Luke Harmon and Stanton Braude, which notes that effective population sizes can be larger than actual population sizes, and says
It’s rather embarrassing when a biology professor makes mistakes in his own field, isn’t it?
Has Jerry gotten himself into a pickle? I have some background in this area — I have worked on coalescent trees of ancestry of genes within a species, I wrote one of the two basic papers on effective population size of populations with overlapping generations, and I even shared a grant with Luke Harmon two years ago.
A few simple points:
1. 10,000 + 2,250 = 12,250 all right, but in fact that number is even greater than 2.
2. Effective population size can be greater than population size. It can get as much as 2 times higher. That still leaves us with a long way to go.
3. The Bryan College administration does not know how to write a Clarification. Their statement says that all humanity are descended from Adam and Eve, but does not make it clear whether there could have been other ancestors too. I suspect they meant that there weren’t any.
4. According to UD’s own statements, Intelligent Design arguments are supposedly not statements about religion, so that ID arguments do not predict anything about Adam and Eve. ID proponents are being slandered when they are called creationists, we are told repeatedly. So why the concern about Adam and Eve at UD?
So was Jerry wrong? About Adam and Eve, no. Though he is wrong when he says that his “website” is not a blog.
Darwin was wrong!!!!!
Seriously, are the ID proponents at UD ever going to wonder why Gould and Eldredge remained persuaded that common descent occurred, and that “punctuated equibrium”, although contrary the uniformly incremental pattern that Darwin envisaged, was nonetheless consistent with Darwin’s proposed adaptive mechanism of heritable variation in reproductive success?
Because Darwin was indeed wrong about uniform change. Unlike us, he didn’t have computers with which to model the predicted output of his mechanism. Indeed he didn’t even know what the vector of heritability was. We do. Here’s a sample output from Eureqa, a program that uses Darwin’s proposed mechanism to “evolve” equations to fit data:
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Pan-hoots
If there is nothing beyond the material universe, judgments of right and wrong are no more informative than pan-hoots.
says “news” at Uncommon Descent. Well, I have no idea what a pan-hoot is, but presumably it is a not-informative thing.
Censorship
There’s a lot of discussion of censorship swirling around the ID/evolution/online world right now, which I find very odd. Apparently the magazine Nautilus has closed a comment thread (without apparently deleting any comments) on the basis that “This is a science magazine, and our comments section isn’t the place to debate whether evolution is true”.
Accusations of “censorship” by “evolutionists” have been flying around for a while now, at least since the Expelled movie and it resurfaced regarding the withdrawal of the Biological Information: New Perspectives book from the Springer catalogue. And now, recently, Jerry Coyne has been named “Censor of the Year” by the Discovery Institute.
My own instincts tend against censorship, and although I do not think that all censorship is bad, I would certainly rather err on the side of too little than too much. Here, as I hope everyone knows, only a very narrow class of material is ever deleted, and only a very narrow class of offenses bring down a ban.
But what is censorship, and who, if anyone, is censoring whom in the ID/evolution debate?
“Historical vs Observational Science”
Let’s lay this one to rest, shall we?

All science is observational – observations are what we call “data”.
All science is predictive, whether it concerns events that happened in the past, and are unlikely to occur again, or events that are reproducible.
Where do we get the probabilities?
asks Winston Ewert at UD. For those of us who can’t post there, this thread is for us to respond here. Winston himself is as ever, cordially invited to join us, as are any UD commenters.
Counting generations of M&Ms
Allan Miller’s post Randomness and evolution deals with neutral drift in the Moran model applied to a bag of M&Ms. Much of the discussion has focused on the question of counting generations in a situation where they overlap. I think it’s a good idea to divert that part of the discussion into its own thread.
Here are the rules. Start with a population of N M&Ms. A randomly chosen M&M dies. Another randomly chosen M&M gives birth to a child M&M. Repeat.
Because the focus of this thread is generation count and not fixation, we will pay no attention to the colors of M&Ms.
How do we count generations of M&Ms?
Randomness and evolution – An Interactive toy
Lizzie Allan Miller said:
Here’s a simple experiment one can actually try. Take a bag of M&M’s, and without peeking reach in and grab one. Eat it. Then grab another and return it to the bag with another one, from a separate bag, of the same colour. Give it a shake. I guarantee (and if you tell me how big your bag is I’ll have a bet on how long it’ll take) that your bag will end up containing only one colour. Every time. I can’t tell you which colour it will be, but fixation will happen.
I’ve written an interactive browser based version you can explore this idea with.
http://mandmcounter.appspot.com/emeniem.html
Darwin backwards?
What is it with ID proponents and gambling? Or rather, what is it that makes people who play p0ker and roulette think that that gives them a relevant background for statistical hypothesis testing and an understanding of stochastic processes such as evolution? Today, “niwrad”, has a post at UD, with one of the most extraordinary garblings of evolutionary theory I think I have yet seen. He has decided that p0ker is an appropriate model this time (makes a change from coin tossing, I guess).
Randomness and evolution
Here’s a simple experiment one can actually try. Take a bag of M&M’s, and without peeking reach in and grab one. Eat it. Then grab another and return it to the bag with another one, from a separate bag, of the same colour. Give it a shake. I guarantee (and if you tell me how big your bag is I’ll have a bet on how long it’ll take) that your bag will end up containing only one colour. Every time. I can’t tell you which colour it will be, but fixation will happen.
Continue reading
Zombie Fred
A neat zombie post from Barry Arrington (thanks, Barry! I do appreciate, and this is without snark, the succinctness and articulacy of your posts – they encapsulate your ideas extremely cogently, and thus make it much easier for me to see just how and why I disagree with you!)
ID proponents: is Chance a Cause?
- If yes, in what sense?
- If no, do you think that evolutionists claim that it is?
- If yes, why do you think this?
- If no, what the heck are we arguing about?
Random Mutations: vjtorley
vjtorley, at UD, writes a post entitled It’s time for scientists to come clean with the public about evolution and the origin of life that includes this:
Edward Frenkel, a professor of mathematics at the University of California, Berkeley, recently reviewed a book titled, Probably Approximately Correct: Nature’s Algorithms for Learning and Prospering in a Complex World (Basic Books, 2013) by computer scientist Leslie Valiant, in a report for the New York Times (Evolution, Speeded by Computation, September 30, 2013). The following excerpt conveys the gist of Dr. Valiant’s conclusions:
The evolution of species, as Darwin taught us, relies on natural selection. But Dr. Valiant argues that if all the mutations that drive evolution were simply random and equally distributed, it would proceed at an impossibly slow and inefficient pace.
Darwin’s theory “has the gaping gap that it can make no quantitative predictions as far as the number of generations needed for the evolution of a behavior of a certain complexity,” he writes. “We need to explain how evolution is possible at all, how we got from no life, or from very simple life, to life as complex as we find it on earth today. This is the BIG question.”
Dr. Valiant proposes that natural selection is supplemented by ecorithms, which enable organisms to learn and adapt more efficiently. Not all mutations are realized with equal probability; those that are more beneficial are more likely to occur. In other words, evolution is accelerated by computation.
The criticisms being made here of the Darwinian theory of evolution are pretty devastating: not only is it far too slow to generate life in all its diversity, but it’s also utterly incapable of making quantitative predictions about the time required for a structure of known complexity to evolve, by natural selection. And there’s no reason to believe that the “nearly neutral theory of evolution” espoused by biologists such as Professor Larry Moran would fare any better, in this regard.
Dr Torley is a scholar and a gentleman and someone for whom I have a great deal of personal respect. In fact I owe him more than one debt of personal kindness. But that does not mean that I think his ideas are correct, and I submit he is profoundly wrong here in an extremely useful way. Unusually, the passage he cites is very specific about the kind of randomness that cannot be the kind of randomness that would produce Darwinian evolution: equally distributed.
A Statistics Question for Barry Arrington
Re your post here:

- If you came across a table on which was set 500 coins (no tossing involved) and all 500 coins displayed the “heads” side of the coin, how on earth would you test “chance” as a hypothesis to explain this particular configuration of coins on a table?
Even if the observer was not party to the information that there was “no tossing involved”?
The reason I ask, is that you seem to have revealed an conceptual error that IMO bedevils much discussion about evolution as an explanation for the complexity of life.
Barry Arrington: his part in my downfall
Just my thoughts on the recent series of posts at Uncommon Descent on Darwin, Eldredge and the fossil record. Click on the link if you want to know more! Continue reading
How Was Darwin Wrong? – Darwin’s Errors
O.k. then, here’s your chance, TSZ folks. Have at it.
Darwin made errors, even Darwinian evolutionist Mike Elzinga agrees.
What are/were those errors/mistakes?
Perhaps the odd closet ‘Darwinist’ might even think to change their mind about calling them-self a ‘Darwinist’ as a result of answers provided in this thread…or it could be a rather short thread, with few admissions.
Context: Preprint for a Douglas Allchin paper in American Biology Teacher, 2009 (same Journal that published Theodosius Dobzhansky’s theistic evolution: “Nothing in Biology Makes Sense…” paper, 1973) Celebrating Darwin’s Error’s.
Title Changed: from “How Darwin Was Wrong” to “How Was Darwin Wrong?” – 06-12-2013
“The selective incompleteness of the fossil record”
Denyse O’Leary quotes Steve Meyer’s question:
Why, he [Agassiz] asked, does the fossil record always happen to be incomplete at the nodes connecting major branches of Darwin’s tree of life, but rarely—in the parlance of modern paleontology—at the “terminal branches” representing the major already known groups of organisms?…
Was there any easy answer to Agassiz’s argument? If so, beyond his stated willingness to wait for future fossil discoveries, Darwin didn’t offer one.
and responds:
And no one else has either.
Oh, yes, they have, Denyse. That’s what what punk eek was. But it also falls readily out of any simulation – you see rapid diversification into a new niche at a node, and thus few exemplars, followed by an increasingly gradual approach to a static optimum, and thus lots of exemplars. But I present an even more graphic response: when you chop down a tree, and saw it up into logs for your fire, what proportion of your logs include a node?
ID & Explanations
Every camp in the ‘biological origins debate’ has its own explanation(s) as to where the complexity and diversity of life comes from. Some of these explanations would seem to be driven by prior commitments and ideologies (on both sides) and in some cases (notably from the DI and over at UD) they are part of a bigger assault on the opposing viewpoints perceived commitments themselves.
So what makes for a good explanation? Here’s a couple of resources I found interesting:
http://www.culturallogic.com/research-links/
http://philosophicaldisquisitions.blogspot.com/2009/12/explanations-gentle-introduction_28.html
http://philosophicaldisquisitions.blogspot.com/2010/05/what-good-is-explanation-part-1.html
http://philosophicaldisquisitions.blogspot.com/2010/06/what-good-is-explanation-part-2.html
Perhaps we could have a discussion on what makes for a good explanation and look at the various available explanations for biological origins in this framework?
[Multiple edits]
Junk DNA
Well, I just got banned again at UD, over my response to this post of Barry’s:
In a prior post I took Dr. Liddle (sorry for the misspelled name) to task for this statement:
“Darwinian hypotheses make testable predictions and ID hypotheses (so far) don’t.”
I responded that this was not true and noted that:
For years Darwinists touted “junk DNA” as not just any evidence but powerful, practically irrefutable evidence for the Darwinian hypothesis. ID proponents disagreed and argued that the evidence would ultimately demonstrate function.
Not only did both hypotheses make testable predictions, the Darwinist prediction turned out to be false and the ID prediction turned out to be confirmed

